1. please do not delete the file "protein_properties.tab" that stores all protein properties.
2. please do not delete the file "trainedComplexes.txt" and "evaluatedComplexes.txt" in the folder "complex".
   These two files are used to store the trained complexex and the test complexes, respectively.
   
3. If you want to evaluate the performance of ClusterEPs, you only copy your trained complexes to the file "trainedComplexes.txt", 
   and copy your test complexes to the file "evaluatedComplexes.txt".
   
   If you only want to identify new complexes, you only copy all of true complexes to the file "trainedComplexes.txt", and 
   make the file "evaluatedComplexes.txt" empty, but do not delete this file.
